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The basic idea is that you create a tab separated txt file with a list of file pairs you want to align and then you tell the aligner to align each of them (the list has to contain full file paths).
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If you set "Ask for confirmation after segmenting" to auto in the setup file, the software will do a statistical examination of the results of the segmentation and decide whether to use the segmented files or return to the unsegmented originals.
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See the main readme for details.
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The files can be txt, docx, pdf or html (they all have to be the same type) and they can be anywhere on your computer.
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You'll probably want to make (most of) these settings in batch_aligner_setup.txt, or else the batch mode won't offer much of an advantage over just running the normal aligner several times.
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The aligner then loops through the file pairs one by one.
If something is wrong with a file pair, it is skipped and the aligner moves on to the next file pair.
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In the scripts folder, you'll find two log files with info on how the alignment went.
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With the correct settings, the aligner can run unattended, i.e. you can start it, leave your computer and come back when all the files are done.
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